rs72704444 chr5:1772874 C>T
- Sequence
acccatgacattcaccagaggaga[C/T]gtctgctccccgagagagggagac
- ASB in cell types
- foreskin keratinocyte GM12878 (female B-cells lymphoblastoid cell line) GM12891 (male B- cells lymphoblastoid cell line) K562 (myelogenous leukemia)
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN MNT_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 1.39 | 0.01 | 2.12 | n/a | n/a | |||
| CTCF_HUMAN | 2.07 | 0.66 | 1.70 | n/a | No Hit | |||
| MNT_HUMAN | 1.68 | -1.05 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.10 | -3.85 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic