rs72705777 chr4:179990255 C>T
- Sequence
gaagaactccgcttggtttgctca[C/T]gtgtgcactgccttttaagtcagg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- SRF_HUMAN BHE40_HUMAN ELF1_HUMAN MEF2B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRF_HUMAN | -2.91 | 3.29 | 1.00 | n/a | No Hit | |||
| BHE40_HUMAN | 2.34 | -3.73 | 1.33 | -4.76 | Concordant | |||
| ELF1_HUMAN | -2.75 | 2.65 | 1.00 | n/a | No Hit | |||
| MEF2B_HUMAN | n/a | 2.12 | 2.00 | n/a | No Hit | |||
| IKZF2_HUMAN | -0.84 | 1.61 | 1.00 | n/a | n/a |
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Motif analysis
