rs7276705 chr21:42863098 A>G
- Sequence
cttccaacctggggccacctactg[A/G]ccacctcctgtctcacttgccttc
- ASB in cell types
- MDA-MB-157 (triple negative breast carcinoma) keratinocytes LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN SNAI2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.16 | 3.19 | 1.33 | 4.15 | Concordant | |||
| SNAI2_HUMAN | 0.58 | 1.99 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Cerebellum, Colon_Transverse, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood