rs72847757 chr2:88016554 T>C
- Sequence
aaacagcaaaaaagagataccagt[T/C]acccggggcctcccacgtcctccc
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) VCaP (prostate carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- PML_HUMAN BRD4_HUMAN HTF4_HUMAN VEZF1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PML_HUMAN | 2.75 | -2.11 | 1.50 | n/a | n/a | |||
| BRD4_HUMAN | 1.20 | 0.37 | 1.18 | n/a | n/a | |||
| HTF4_HUMAN | 2.06 | -0.02 | 1.67 | n/a | No Hit | |||
| VEZF1_HUMAN | 1.90 | -0.63 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Pancreas, Thyroid