rs72882524 chr18:6729259 C>T

Sequence
agcaggagccccaaaggatcccgg[C/T]cggtttccagtttcctagaagcgg
ASB in cell types
HEK293 (embryonic kidney)
ASB for transcription factors
ZN335_HUMAN PRDM4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN335_HUMAN n/a 2.76 1.001.3·10-6 2.00 n/a No Hit
PRDM4_HUMAN n/a 1.94 1.000.02 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Brain_Caudate_basal_ganglia,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Brain_Spinal_cord_cervical_c-1,  Brain_Substantia_nigra,  Breast_Mammary_Tissue,  Esophagus_Mucosa,  Muscle_Skeletal,  Ovary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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