rs72902427 chr2:70190907 T>G
- Sequence
gccgccccggtccttgctcagcac[T/G]acccccttacctgccctgcgcacc
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) CD14+ monocytes 22RV1 (prostate carcinoma)
- ASB for transcription factors
- CLOCK_HUMAN STAT1_HUMAN NELFA_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CLOCK_HUMAN | 2.98 | n/a | 1.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.86 | -0.35 | 3.00 | n/a | No Hit | |||
| NELFA_HUMAN | -0.91 | 1.39 | 1.50 | n/a | n/a | |||
| ANDR_HUMAN | 2.48 | -1.70 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Whole_Blood