rs72911331 chr1:56821250 A>T
- Sequence
ggcctcaggccagcctacactggc[A/T]gagtgggtggagcagggcagcagg
- ASB in cell types
- D54 (H54, Human glioblastoma) HL-60 (acute myeloid leukemia) HuCCT1 (intrahepatic cholangiocarcinoma) CD34+ stem cells-derived erythroblasts
- ASB for transcription factors
- EGR1_HUMAN SMC1A_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | -0.65 | 2.64 | 1.00 | 0.55 | Weak Concordant | |||
| SMC1A_HUMAN | 1.39 | 2.30 | 2.00 | n/a | n/a | |||
| STAT1_HUMAN | 2.19 | 0.34 | 2.00 | n/a | No Hit |
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Motif analysis
