rs73001406 chr11:118690148 G>A

Sequence
ccctagaaggttccagacattccc[G/A]tgactgtgggtggggctggactgg
ASB in cell types
THP-1 (acute monocytic leukemia) VCaP (prostate carcinoma) pancreas foreskin keratinocyte
ASB for transcription factors
CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN JUN_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.48 0.04 3.6·10-741.00 1.23 n/a No Hit
STAG1_HUMAN 0.29 1.02 1.001.3·10-13 1.00 n/a n/a
RAD21_HUMAN 1.90 0.32 5.0·10-121.00 1.11 n/a n/a
JUN_HUMAN 1.50 -0.24 2.9·10-40.89 3.33 n/a No Hit
CDN1B_HUMAN 2.10 n/a 6.0·10-31.00 3.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Hypothalamus,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Liver,  Lung,  Nerve_Tibial,  Pancreas,  Pituitary,  Small_Intestine_Terminal_Ileum,  Stomach,  Testis,  Thyroid,  Whole_Blood

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