rs73038529 chr19:43951110 G>C
- Sequence
gtagttgcaacacttccccctgga[G/C]ggtaaaactgtgaacgtttactcc
- ASB in cell types
- K562 (myelogenous leukemia) GM12891 (male B- cells lymphoblastoid cell line) GM12878 (female B-cells lymphoblastoid cell line) GM10847 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN ATF4_HUMAN TF65_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.81 | -0.94 | 1.25 | -5.17 | Concordant | |||
| STAG1_HUMAN | 3.08 | -2.24 | 1.00 | n/a | n/a | |||
| ATF4_HUMAN | n/a | 1.86 | 2.00 | n/a | No Hit | |||
| TF65_HUMAN | 2.51 | -0.13 | 2.00 | n/a | No Hit | |||
| FOXM1_HUMAN | n/a | 1.93 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid