rs7305907 chr12:48717052 A>G
- Sequence
gggtcaggctgcgaggccgcaatt[A/G]tagtgggatggggcggccgcccac
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) thymus-derived CD34- cells HCT-116 (colon carcinoma)
- ASB for transcription factors
- RBM25_HUMAN BC11B_HUMAN ATRX_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | n/a | 3.59 | 2.00 | n/a | n/a | |||
| BC11B_HUMAN | -0.25 | 2.88 | 2.00 | n/a | n/a | |||
| ATRX_HUMAN | 2.71 | -2.78 | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | 0.16 | 1.05 | 1.00 | n/a | n/a | |||
| IRF5_HUMAN | 1.91 | -1.57 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Hippocampus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood