rs7315028 chr12:38316721 G>A

Sequence
aaacccgtcactccaggaaacagc[G/A]acccgctgttttccggatccgcgc
ASB in cell types
HepG2 (hepatoblastoma) MOLT-4 (Adult T acute lymphoblastic leukemia) HCT-116 (colon carcinoma) MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
CTCF_HUMAN ELF1_HUMAN FOXK2_HUMAN PO2F1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.19 0.95 8.0·10-31.00 1.42 n/a No Hit
ELF1_HUMAN 1.63 0.43 0.020.74 1.20 n/a No Hit
FOXK2_HUMAN 2.28 -1.98 0.021.00 1.00 n/a n/a
PO2F1_HUMAN 2.67 -2.41 0.031.00 1.00 n/a No Hit
CENPA_HUMAN 1.46 -0.14 0.031.00 1.81 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

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