rs73208756 chr8:10800025 C>T

Sequence
agccgagactgcgatccaggtctg[C/T]gtgatgacacatcccggactcttt
ASB in cell types
K562 (myelogenous leukemia) HKC8 (kidney proximal tubule cell line)
ASB for transcription factors
MEIS2_HUMAN ATF4_HUMAN NR2C1_HUMAN TIF1A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MEIS2_HUMAN 3.04 n/a 2.7·10-101.00 2.00 n/a No Hit
ATF4_HUMAN 2.52 n/a 1.5·10-71.00 2.00 n/a No Hit
NR2C1_HUMAN 1.19 n/a 4.2·10-41.00 2.00 n/a No Hit
TIF1A_HUMAN 2.20 -1.70 3.7·10-31.00 2.00 n/a n/a
FOSL1_HUMAN 2.92 n/a 4.6·10-31.00 2.00 n/a No Hit
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Motif analysis

EPAS1_HUMAN Concordant
EPAS1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Lung,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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