rs73219090 chr21:41862200 C>A
- Sequence
tgccccctgcaggaacccacgtga[C/A]tcacggtcaggagcttgggcgatg
- ASB in cell types
- GM19099 (female B-cells Lymphoblastoid Cell Lines) GM18951 (B-cells Lymphoblastoid Cell Lines) GM12878 (female B-cells lymphoblastoid cell line) GM19193 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN IKZF1_HUMAN STAG1_HUMAN BHE40_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -1.40 | 3.52 | 1.62 | n/a | No Hit | |||
| IKZF1_HUMAN | 2.52 | -1.59 | 1.00 | n/a | No Hit | |||
| STAG1_HUMAN | -2.41 | 2.26 | 1.17 | n/a | n/a | |||
| BHE40_HUMAN | 2.36 | -3.71 | 1.33 | -1.24 | Weak Concordant | |||
| ZN687_HUMAN | 2.54 | -2.20 | 1.00 | n/a | n/a |
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Motif analysis
