rs73466127 chr6:78436525 G>A
- Sequence
ttcagaaattgtcaattgaccact[G/A]ggtggtgcaaaatcacccatggct
- ASB in cell types
- GM19239 (male B-cells lymphoblastoid cell line) GM19240 (B cells Lymphoblastoid Cell Lines) liver
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.05 | 2.91 | 2.12 | 3.59 | Concordant | |||
| RAD21_HUMAN | -4.37 | 2.57 | 1.50 | n/a | n/a | |||
| STAG1_HUMAN | n/a | 2.46 | 3.00 | n/a | n/a |
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Motif analysis
