rs73919270 chr2:20114212 C>G
- Sequence
caggtttcctgcagcctcaggctc[C/G]ggatcagccaggccagactgagtc
- ASB in cell types
- HUVEC-C (HUVEC, umbilical vein endothelial cells) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- NOTC1_HUMAN RARA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NOTC1_HUMAN | 0.85 | -0.36 | 2.50 | n/a | n/a | |||
| RARA_HUMAN | -1.59 | 2.07 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Pancreas, Small_Intestine_Terminal_Ileum, Thyroid