rs73923215 chr19:10404166 A>C
- Sequence
ccattcgcagcgaggactcgcgcg[A/C]gcgcgcgcgcgcacacacacacac
- ASB in cell types
- HEK293 (embryonic kidney) GSC23 (Glioblastoma) CUTLL1 (T-cell lymphoblastic lymphoma 1) HCT-116 (colon carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN MAZ_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.71 | 0.51 | 1.16 | n/a | No Hit | |||
| RAD21_HUMAN | 1.97 | -0.54 | 1.11 | n/a | n/a | |||
| MAZ_HUMAN | 1.87 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Tibial, Esophagus_Gastroesophageal_Junction, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood