rs7406025 chr17:81727588 A>G
- Sequence
tgtgaccatgaggcaagtcagcgc[A/G]ggccgaagctgacgacgcgaagac
- ASB in cell types
- HepG2 (hepatoblastoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN SOX13_HUMAN RING2_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.10 | 1.13 | 1.64 | n/a | No Hit | |||
| SOX13_HUMAN | n/a | 3.38 | 2.00 | n/a | n/a | |||
| RING2_HUMAN | n/a | 2.34 | 2.00 | n/a | n/a | |||
| CREB1_HUMAN | -0.40 | 1.39 | 1.93 | n/a | No Hit | |||
| GABPA_HUMAN | 0.04 | 2.71 | 2.38 | n/a | No Hit |
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