ADASTRA v5.1.3
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rs743024
chr20:23361839
T
>
C
Sequence
cgccttgcggccagaagcccggaa[T/C]ggacgcgaaagtgaccacgcgaat
ASB in cell types
HEK293 (embryonic kidney)
LNCaP C4-2B (prostate carcinoma)
MCF7 (Invasive ductal breast carcinoma)
AML (monocytes and acute myeloid leukemia)
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(+3 others)
ASB for transcription factors
ZBT11_HUMAN
ETS1_HUMAN
JUN_HUMAN
SRBP2_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZBT11_HUMAN
n/a
2.83
1.00
1.8·10
-4
2.00
n/a
n/a
ETS1_HUMAN
1.82
-1.39
0.02
1.00
1.00
n/a
No Hit
JUN_HUMAN
0.79
0.46
0.04
1.00
2.25
n/a
No Hit
SRBP2_HUMAN
1.46
0.91
0.05
0.83
3.00
n/a
No Hit
Items per page:
5
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GRASP
cystatin c in serum
GTEx eQTL
Brain_Caudate_basal_ganglia
,
Brain_Nucleus_accumbens_basal_ganglia
,
Cells_Cultured_fibroblasts
,
Heart_Atrial_Appendage
,
Heart_Left_Ventricle
,
Muscle_Skeletal
,
Nerve_Tibial
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Testis
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)