rs743523 chr22:22061828 C>T
- Sequence
gtgcactctgatctgtaactattg[C/T]gcaaatattacaacagagcctgtc
- ASB in cell types
- epithelial cell of prostate tibial nerve HL-60 (acute myeloid leukemia) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN SKI_HUMAN EP300_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.30 | 0.95 | 1.40 | n/a | No Hit | |||
| SKI_HUMAN | 3.46 | n/a | 3.00 | n/a | n/a | |||
| EP300_HUMAN | 1.70 | -0.64 | 1.11 | n/a | n/a | |||
| ANDR_HUMAN | n/a | 3.17 | 2.00 | 1.77 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP birth weight, college completion, fasting insulin, homa-ir, maternal transmission distortion, transmission distortion, years of education