rs7446382 chr5:178860008 G>T
- Sequence
gctctgcggagctttcgctgcccg[G/T]tgagcggcgccgggcttgaggtcg
- ASB in cell types
- breast tumor HCT-116 (colon carcinoma) foreskin keratinocyte
- ASB for transcription factors
- ESR1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.67 | n/a | 3.00 | n/a | No Hit | |||
| CTCF_HUMAN | 1.36 | -0.31 | 1.97 | -2.33 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Breast_Mammary_Tissue, Esophagus_Gastroesophageal_Junction, Muscle_Skeletal, Nerve_Tibial