rs744759 chr19:53808876 G>C
- Sequence
gcctttatccactagatgtcagta[G/C]tattatttgcttcccagttgtgac
- ASB in cell types
- A549 (lung carcinoma) GM12892 (female B-cells lymphoblastoid cell line) Kelly (neuroblastoma) THP-1 (acute monocytic leukemia)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.50 | 0.53 | 1.22 | n/a | No Hit | |||
| RAD21_HUMAN | 1.42 | 0.64 | 1.16 | n/a | n/a | |||
| STAG1_HUMAN | 2.66 | -0.98 | 1.33 | n/a | n/a | |||
| SMC3_HUMAN | 1.64 | 0.01 | 1.12 | n/a | n/a |
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