rs74580656 chr2:25228920 C>T
- Sequence
gagggagccgccctcctcaccccc[C/T]agtggagctgagccagggagcttt
- ASB in cell types
- Kelly (neuroblastoma) SH-SY5Y (neuroblastoma) MS-1 (Small cell lung carcinoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CTCF_HUMAN CTCFL_HUMAN STAG1_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.13 | 1.74 | 1.48 | 2.58 | Concordant | |||
| CTCFL_HUMAN | -1.65 | 2.68 | 1.76 | 3.22 | Concordant | |||
| STAG1_HUMAN | -0.87 | 1.41 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | 0.25 | 1.24 | 1.53 | n/a | n/a | |||
| IKZF3_HUMAN | -1.48 | 1.73 | 1.00 | n/a | n/a |
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Motif analysis
