rs7458962 chr7:48088961 A>T

Sequence
ctctgtagtaggggctgtttaatg[A/T]gtaacagaactggctgctggttct
ASB in cell types
K562 (myelogenous leukemia) HepG2 (hepatoblastoma) A549 (lung carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
CEBPG_HUMAN TCF21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CEBPG_HUMAN n/a 3.53 1.004.6·10-6 1.75 n/a No Hit
TCF21_HUMAN 1.29 n/a 0.041.00 3.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Frontal_Cortex_BA9,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Liver,  Muscle_Skeletal,  Nerve_Tibial,  Prostate,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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