rs747460 chr1:41496358 C>G
- Sequence
cctcccgaccaattttgggcaaag[C/G]aggggcggcggcgcgctacgtgcc
- ASB in cell types
- LNCaP (prostate carcinoma) MDA-MB-231 (breast adenocarcinoma) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) MDA-MB-231ERb(triple negative breast cancer)
- ASB for transcription factors
- ESR2_HUMAN BRD4_HUMAN MAZ_HUMAN TBP_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR2_HUMAN | 1.97 | n/a | 3.00 | n/a | No Hit | |||
| BRD4_HUMAN | 1.09 | 0.47 | 1.33 | n/a | n/a | |||
| MAZ_HUMAN | n/a | 1.63 | 2.00 | 1.97 | Weak Concordant | |||
| TBP_HUMAN | 0.33 | 1.39 | 1.00 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Nerve_Tibial, Testis