rs74778497 chr20:33993764 G>A
- Sequence
ctcgtgtcaccgtgtccttcccag[G/A]agacagagaaggaggagagcccgg
- ASB in cell types
- breast tumor HUVEC-C (HUVEC, umbilical vein endothelial cells) iPS-derived dermal fibroblasts CD14+ monocytes
- ASB for transcription factors
- ESR1_HUMAN SUH_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.95 | 0.08 | 1.67 | n/a | No Hit | |||
| SUH_HUMAN | 2.41 | -4.87 | 2.00 | -1.06 | Weak Concordant | |||
| STAT1_HUMAN | 1.69 | -0.27 | 3.00 | 4.62 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Breast_Mammary_Tissue, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic