rs7480668 chr11:12086482 A>G

Sequence
atggcttgagaggaaattctctgc[A/G]aggagctgcatgcaaataggtcat
ASB in cell types
MCF10A (breast epithelial cells)
ASB for transcription factors
P63_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
P63_HUMAN 2.11 -0.66 3.8·10-41.00 1.67 -1.68 Weak Concordant
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Motif analysis

P63_HUMAN Weak Concordant
P63_HUMAN pic

Genetic associations

GRASP hdl cholesterol change with statins,  mitral annular calcium,  total cholesterol change with statins
GTEx eQTL Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach

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