rs7497457 chr15:67840385 C>A
- Sequence
cgcgtctttccactggggccgggg[C/A]ggcgcggagggttcagacgcgggc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HEK293 (embryonic kidney) K562 (myelogenous leukemia) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- PRD10_HUMAN FOXK2_HUMAN GCR_HUMAN ZBT20_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRD10_HUMAN | 0.49 | 1.93 | 1.50 | n/a | n/a | |||
| FOXK2_HUMAN | 3.19 | 0.71 | 1.50 | n/a | n/a | |||
| GCR_HUMAN | 1.32 | 0.16 | 1.21 | n/a | No Hit | |||
| ZBT20_HUMAN | 1.75 | -1.57 | 1.00 | n/a | n/a | |||
| STAT1_HUMAN | 1.42 | -1.23 | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP birth weight, body mass index (bmi), college completion, fasting insulin, homa-b, homa-ir, refractive error, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid