rs7502685 chr17:38492212 G>C
- Sequence
agggcgcagaaggccttggttttc[G/C]agagcccaaccctaaggcagcact
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM02610 (Lymphoblastoid Cell Lines) neural cell SH-SY5Y (neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.00 | -0.05 | 1.84 | n/a | No Hit | |||
| RAD21_HUMAN | 1.88 | -0.19 | 1.92 | n/a | n/a | |||
| SMC3_HUMAN | 2.72 | 0.36 | 1.70 | n/a | n/a | |||
| STAG1_HUMAN | 1.37 | -1.31 | 4.17 | n/a | n/a | |||
| STAG2_HUMAN | 3.03 | -2.03 | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP fasting insulin, ldl cholesterol, refractive error, total cholesterol, transmission distortion