rs752371 chr17:4739520 C>T

Sequence
gccctgctgtgccccgaccgtgcg[C/T]tcagtactcggcccgcgccatgcc
ASB in cell types
CD14+ monocytes 22RV1 (prostate carcinoma)
ASB for transcription factors
STAT1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 2.91 -0.98 6.2·10-51.00 2.00 n/a No Hit
ANDR_HUMAN 2.28 -0.23 0.031.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Nerve_Tibial,  Ovary,  Pancreas,  Thyroid,  Whole_Blood

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