rs75239998 chr16:4767295 A>G
- Sequence
cactgtggttaatgtggtcctcaa[A/G]ggcacgcattgtgggtaacgtagt
- ASB in cell types
- K562 (myelogenous leukemia) CD14+ monocytes CD34+ hematopoietic stem cells-derived proerythroblasts HCT-116 (colon carcinoma)
- ASB for transcription factors
- STAT1_HUMAN GATA1_HUMAN RFOX2_HUMAN EGR1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.66 | n/a | 2.00 | n/a | No Hit | |||
| GATA1_HUMAN | -1.98 | 2.78 | 2.00 | n/a | No Hit | |||
| RFOX2_HUMAN | -0.71 | 1.59 | 2.00 | n/a | n/a | |||
| EGR1_HUMAN | 0.03 | 1.00 | 1.43 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis