rs75315904 chr1:173867913 G>A
- Sequence
ttcagggtgaccttagcagacaaa[G/A]gctggagcgccccaaaacccgcaa
- ASB in cell types
- K562 (myelogenous leukemia) tibial nerve MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CTCF_HUMAN CLOCK_HUMAN EWS_HUMAN KDM5B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.67 | 3.49 | 1.00 | n/a | No Hit | |||
| CLOCK_HUMAN | 3.06 | n/a | 2.00 | n/a | No Hit | |||
| EWS_HUMAN | 3.16 | n/a | 2.00 | n/a | n/a | |||
| KDM5B_HUMAN | 2.30 | n/a | 3.00 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid