ADASTRA v5.1.3
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rs7534432
chr1:3618992
C
>
T
Sequence
ctgactcccacatccatcggagaa[C/T]aagggcacaggcaggacccactga
ASB in cell types
HEK293 (embryonic kidney)
GM19240 (B cells Lymphoblastoid Cell Lines)
ASB for transcription factors
CTCF_HUMAN
SMCA4_HUMAN
HDAC1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN
0.84
0.71
0.03
0.55
1.33
n/a
No Hit
SMCA4_HUMAN
0.30
2.38
1.00
0.03
1.00
n/a
n/a
HDAC1_HUMAN
1.42
-1.00
0.03
1.00
1.17
n/a
n/a
Items per page:
5
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Artery_Aorta
,
Artery_Coronary
,
Artery_Tibial
,
Brain_Caudate_basal_ganglia
,
Brain_Nucleus_accumbens_basal_ganglia
,
Breast_Mammary_Tissue
,
Cells_Cultured_fibroblasts
,
Colon_Sigmoid
,
Colon_Transverse
,
Esophagus_Gastroesophageal_Junction
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Heart_Left_Ventricle
,
Lung
,
Muscle_Skeletal
,
Nerve_Tibial
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Testis
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)