rs7536078 chr1:44731082 A>G
- Sequence
cccaccaacatagggcttcaaaaa[A/G]tttgcttgaaactcaaaacggttt
- ASB in cell types
- HepG2 (hepatoblastoma) breast tumor BEAS-2B (bronchial epithelium) CD14+ monocytes
- ASB for transcription factors
- RFOX2_HUMAN TBP_HUMAN BRD4_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFOX2_HUMAN | 3.00 | -3.25 | 1.33 | n/a | n/a | |||
| TBP_HUMAN | 2.28 | -1.50 | 1.33 | n/a | No Hit | |||
| BRD4_HUMAN | 1.20 | 0.28 | 1.41 | n/a | n/a | |||
| ESR1_HUMAN | 2.44 | -5.64 | 1.33 | n/a | No Hit | |||
| NDF1_HUMAN | 1.24 | -0.36 | 1.25 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood