rs7538796 chr1:3618993 A>G

Sequence
tgactcccacatccatcggagaac[A/G]agggcacaggcaggacccactgat
ASB in cell types
HEK293 (embryonic kidney) GM19240 (B cells Lymphoblastoid Cell Lines)
ASB for transcription factors
CTCF_HUMAN SMCA4_HUMAN HDAC1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.84 0.67 0.020.65 1.31 n/a No Hit
SMCA4_HUMAN 0.30 2.38 1.000.03 1.00 n/a n/a
HDAC1_HUMAN 1.41 -1.00 0.041.00 1.17 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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