rs7542685 chr1:227542752 C>A
- Sequence
gggaggtggcgtccctgtccccag[C/A]caggcggcagcgcgaagctgcctc
- ASB in cell types
- neutrophils from periferal blood CD34+ hematopoietic stem cells upper lobe of left lung HCT-116 (colon carcinoma)
- ASB for transcription factors
- TIF1B_HUMAN RAD21_HUMAN SMC1A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TIF1B_HUMAN | n/a | 4.00 | 2.00 | n/a | n/a | |||
| RAD21_HUMAN | 0.81 | 1.39 | 1.08 | n/a | n/a | |||
| SMC1A_HUMAN | 1.78 | 0.68 | 1.45 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Muscle_Skeletal, Nerve_Tibial, Pituitary, Testis