rs7542969 chr1:27155039 A>G
- Sequence
gcccctcctcgcggccctggcgcg[A/G]cgcggcgctccgccccggcccagc
- ASB in cell types
- K562 (myelogenous leukemia) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- NONO_HUMAN ILF3_HUMAN STAG1_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NONO_HUMAN | 1.97 | -1.67 | 1.00 | n/a | n/a | |||
| ILF3_HUMAN | 1.38 | -1.17 | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | 0.27 | 1.15 | 1.00 | n/a | n/a | |||
| GCR_HUMAN | 0.77 | 0.08 | 1.09 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood