rs75451252 chr1:11908325 A>G
- Sequence
ttccgttaaatcgcgtgtggagct[A/G]tgtaaagtgtattatagaacaaat
- ASB in cell types
- K562 (myelogenous leukemia) MOLM14 (Adult acute myeloid leukemia) SUM159PT (Triple negative breast cancer) HeLa (cervical adenocarcinoma)
- ASB for transcription factors
- CDK8_HUMAN SMAD3_HUMAN SPT5H_HUMAN ARID2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CDK8_HUMAN | 2.74 | n/a | 1.50 | n/a | n/a | |||
| SMAD3_HUMAN | 2.15 | n/a | 2.00 | n/a | No Hit | |||
| SPT5H_HUMAN | 0.63 | -0.60 | 1.67 | n/a | n/a | |||
| ARID2_HUMAN | 1.63 | -0.95 | 1.75 | n/a | n/a | |||
| NFIC_HUMAN | 0.85 | -0.85 | 1.00 | n/a | No Hit |
Items per page:
1 – 5 of 13
Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Muscle_Skeletal, Testis, Thyroid, Whole_Blood