rs754643 chr15:59689586 T>C
- Sequence
aggcgtttcttccctctttgctgt[T/C]cgcagggacgctgcctggtagttt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) fetal bone marrow-derived mononuclear cells CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- KMT2A_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KMT2A_HUMAN | 3.02 | n/a | 1.50 | n/a | n/a | |||
| IKZF2_HUMAN | -0.31 | 1.98 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid, Whole_Blood