rs75523 chr6:23566428 C>G

Sequence
ctgttaggcgcaaaactacgacca[C/G]aacccagtatcctctattccctgc
ASB in cell types
VCaP (prostate carcinoma) LNCaP (prostate carcinoma) LNCaP95
ASB for transcription factors
ANDR_HUMAN FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 0.04 1.73 1.001.6·10-17 2.20 n/a No Hit
FOXA1_HUMAN -0.29 1.96 1.008.5·10-6 2.20 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP homa-b,  total cholesterol,  years of education

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