rs75534050 chr15:79007251 A>G
- Sequence
gctgcttgtgaacttgaggtcagc[A/G]gcctctacagggcatagtgggaac
- ASB in cell types
- thoracic aorta prostate gland Peyer's patch LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.18 | 2.58 | 1.71 | 2.90 | Concordant | |||
| STAG1_HUMAN | -2.13 | 2.27 | 1.00 | n/a | n/a |
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Motif analysis
