ADASTRA v5.1.3
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rs7554486
chr1:8702298
G
>
A
Sequence
caaacaatgcccacagagcgcggg[G/A]cacatgtgcgccagggacgcttaa
ASB in cell types
K562 (myelogenous leukemia)
MCF7 WS8 cells
ASB for transcription factors
MGAP_HUMAN
FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MGAP_HUMAN
-3.01
3.06
1.00
1.8·10
-3
1.00
n/a
n/a
FOXA1_HUMAN
0.81
0.53
0.04
1.00
1.73
n/a
No Hit
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
chronic kidney disease
,
diabetic retinopathy in type 2 diabetes mellitus
,
triglycerides change with statins
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Artery_Tibial
,
Esophagus_Mucosa
,
Heart_Left_Ventricle
,
Lung
,
Muscle_Skeletal
,
Nerve_Tibial
,
Pancreas
,
Prostate
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)