rs75579810 chr2:18178938 C>T
- Sequence
agacccaactcttggttagcactc[C/T]ctctagtggcagctccatgaatct
- ASB in cell types
- A549 (lung carcinoma) PC9 (lung adenocarcinoma) HMEC (human mammary epithelial cells) GM19099 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.14 | 0.31 | 2.68 | -4.18 | Concordant | |||
| RAD21_HUMAN | 1.49 | -0.86 | 1.33 | n/a | n/a | |||
| STAG2_HUMAN | 2.33 | -2.17 | 1.00 | n/a | n/a |
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Motif analysis
