rs7559215 chr2:96208569 C>G

Sequence
cacggtcccgcggccaggagccgc[C/G]gctcatctgtctctgcagccaccg
ASB in cell types
K562 (myelogenous leukemia) breast tumor 22RV1 (prostate carcinoma)
ASB for transcription factors
ESR1_HUMAN VEZF1_HUMAN NELFA_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 2.61 -4.84 6.1·10-31.00 2.00 n/a No Hit
VEZF1_HUMAN n/a 1.99 1.000.03 2.00 n/a No Hit
NELFA_HUMAN -2.15 1.39 1.000.04 1.50 n/a n/a
ANDR_HUMAN 2.77 n/a 0.041.00 3.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cortex,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid,  Whole_Blood

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