rs7564789 chr2:11132831 C>G

Sequence
atcgccccacggcctgacgggctg[C/G]cggaagcaagtgcaataatggtgg
ASB in cell types
K562 (myelogenous leukemia) IMR90 (lung fibroblasts) CD14+ monocytes GM02630 (Fanconi anemi)
ASB for transcription factors
STAT1_HUMAN GABP1_HUMAN PKNX1_HUMAN ELF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 3.59 n/a 3.8·10-51.00 2.00 n/a No Hit
GABP1_HUMAN 2.54 n/a 4.2·10-41.00 2.00 n/a n/a
PKNX1_HUMAN 3.36 n/a 4.2·10-41.00 2.00 0.19 Weak Discordant
ELF1_HUMAN 2.09 -0.87 1.1·10-31.00 2.00 -1.26 Weak Concordant
STAG1_HUMAN 0.38 -0.10 2.9·10-31.00 1.00 n/a n/a
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Motif analysis

PKNX1_HUMAN Weak Discordant
PKNX1_HUMAN pic

Genetic associations

GRASP birth weight,  hdl cholesterol,  total cholesterol,  total cholesterol change with statins
GTEx eQTL Brain_Nucleus_accumbens_basal_ganglia,  Heart_Left_Ventricle

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