rs7567461 chr2:112049516 G>T
- Sequence
caggcggaccgtggtctagtggta[G/T]cgtaagtgtcaaggaaaaacaccc
- ASB in cell types
- MCF7L-P(immortalized breast epithelial cell line) HeLa (cervical adenocarcinoma) MCF7 (Invasive ductal breast carcinoma) adrenal gland
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN KDM6A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.48 | 0.36 | 1.35 | -1.00 | Weak Concordant | |||
| STAG1_HUMAN | 0.52 | -0.32 | 1.00 | n/a | n/a | |||
| KDM6A_HUMAN | 2.41 | -1.65 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Cells_Cultured_fibroblasts, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood