rs7569840 chr2:64989353 T>C
- Sequence
cgggctggggccgctggcgcgccc[T/C]cctacttccccgtctgcgtccgcg
- ASB in cell types
- Th1-cells MOLT-4 (Adult T acute lymphoblastic leukemia) GM19238 (female B-cells lymphoblastoid cell lines)
- ASB for transcription factors
- TBX21_HUMAN PATZ1_HUMAN CTCF_HUMAN SPT5H_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX21_HUMAN | 2.50 | -1.23 | 1.00 | n/a | No Hit | |||
| PATZ1_HUMAN | -1.81 | 2.08 | 1.00 | -3.96 | Discordant | |||
| CTCF_HUMAN | 0.33 | 1.36 | 1.32 | n/a | No Hit | |||
| SPT5H_HUMAN | 1.58 | -0.29 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Testis