rs758192 chr16:1929854 C>G
- Sequence
gcagaccacccggcctggcagcac[C/G]gagcgagcgtgccccctgctggtc
- ASB in cell types
- K562 (myelogenous leukemia) T47D (invasive ductal carcinoma) GM02630 (Fanconi anemi) GM12890 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- STAG1_HUMAN RAD21_HUMAN STAG2_HUMAN SKIL_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | -0.03 | 1.92 | 1.24 | n/a | n/a | |||
| RAD21_HUMAN | 0.16 | 1.84 | 1.63 | n/a | n/a | |||
| STAG2_HUMAN | -2.76 | 3.14 | 1.00 | n/a | n/a | |||
| SKIL_HUMAN | -5.22 | 3.04 | 2.00 | n/a | n/a | |||
| SMC1A_HUMAN | 1.41 | 2.31 | 1.58 | n/a | n/a |
Items per page:
1 – 5 of 5
Motif analysis
No data available
Genetic associations
GTEx eQTL Breast_Mammary_Tissue, Esophagus_Gastroesophageal_Junction, Liver, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg