rs7592048 chr2:118186479 T>A
- Sequence
ccctccgccagttccgggcttgcg[T/A]ccccgccaggctcccgcgcccgtg
- ASB in cell types
- MOLT-4 (Adult T acute lymphoblastic leukemia) HCT-116 (colon carcinoma) GM12878 (female B-cells lymphoblastoid cell line) A549 (lung carcinoma)
- ASB for transcription factors
- SPT5H_HUMAN MAX_HUMAN FOXP1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPT5H_HUMAN | 0.68 | 1.30 | 1.00 | n/a | n/a | |||
| MAX_HUMAN | 1.69 | -0.67 | 1.30 | n/a | No Hit | |||
| FOXP1_HUMAN | 2.19 | -1.71 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, diastolic blood pressure (dbp), hdl cholesterol change with statins, ldl cholesterol
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Coronary, Artery_Tibial, Cells_Cultured_fibroblasts, Liver, Lung, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis