rs7597228 chr2:42102571 C>G
- Sequence
agacagcccctggttgtgatttgt[C/G]gtttccagtccagctagagtccca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) iPS-derived dermal fibroblasts
- ASB for transcription factors
- EP300_HUMAN RARA_HUMAN RUNX3_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EP300_HUMAN | -0.37 | 1.78 | 1.00 | n/a | n/a | |||
| RARA_HUMAN | 0.12 | 2.44 | 1.00 | n/a | No Hit | |||
| RUNX3_HUMAN | -1.95 | 2.39 | 1.00 | 8.06 | Concordant | |||
| STAG1_HUMAN | 1.11 | 1.01 | 1.00 | n/a | n/a |
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Motif analysis
