rs7603642 chr2:169824977 G>A

Sequence
gagctgcagcgtttatcttgagcc[G/A]gggttccgctggccacctgggggc
ASB in cell types
HepG2 (hepatoblastoma) CD14+ monocytes 22RV1 (prostate carcinoma) CD34+ hematopoietic stem cells
ASB for transcription factors
CTCF_HUMAN STAT1_HUMAN ANDR_HUMAN TIF1B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.40 1.09 1.001.4·10-7 1.22 n/a No Hit
STAT1_HUMAN 2.63 -5.18 8.1·10-51.00 2.00 n/a No Hit
ANDR_HUMAN 2.90 -5.17 2.4·10-41.00 2.00 n/a No Hit
TIF1B_HUMAN 3.03 0.29 4.1·10-30.79 1.50 n/a n/a
TYY1_HUMAN 1.75 -0.12 0.041.00 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial

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